Scaffold Ga0153698_1093

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1093
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37158
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (72.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007742	Metagenome	345	Y
F027821	Metagenome	193	Y
F033355	Metagenome	177	Y
F044456	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_109312	F027821	GAGG	MQHKTKDNSTGKNKDFYSRGKQMFDRIQPLKPPIQADIDLLYTANSADIEALEDAKITLNVIKEVDPGTFDEIIDSSLALIDKALGMSYGDAMERVAKRAGGKV*
Ga0153698_10932	F007742	N/A	MLRVLQRMTYYTTKGAAQALADTLAAQDADAWLYEVHASPRGFYIAIFDFDHFFLGNL*
Ga0153698_109321	F044456	GAGG	VIETILTIFAIGFLGIALAIGGVCIMVWLALNED*
Ga0153698_10934	F033355	GGAG	MITIGKTTYKTNRADIFGHHDKATGKHKPVKSKGAVKRFYPPFGATMSTAEYVAAYETLNKGLTVWDWQPLSTAPTVAEGADSAWEVEHDAD*