Scaffold Ga0153698_1084

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1084
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38375
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048855	Metagenome	147	Y
F051066	Metagenome	144	Y
F053985	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_108418	F051066	GGAGG	MTKHRHKDGPQYPTLAGLDRYRRAPDPDRRAYGQAVLSVIRALQARELARKLPSHPCPCASGVWDSDGQAILRAVRAQNRRA*
Ga0153698_108420	F048855	GGGGG	MITTEIHHDRTRTVAYYGRLLGHYGPVRYKRTHARAWRCVSVLGALGYARNERDARRWLMEMVP*
Ga0153698_108427	F053985	GGAG	MFKIGVNEHDEVAYVRIQIAAKAIAEAALLAYYCEGRKKQMFHDEMEREIEELLIILGVDDRATACAVDDATETYQYQIENLRAALRVIEDTPPREIECAWSVATRALREDDEHAALAAKQIR*