Scaffold Ga0153698_1081

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1081
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38812
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (84.06%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F009953	Metagenome / Metatranscriptome	310	Y
F014358	Metagenome	263	Y
F034467	Metagenome	174	Y
F038590	Metagenome / Metatranscriptome	165	Y
F053072	Metagenome	141	Y
F070994	Metagenome	122	Y
F075680	Metagenome	118	Y
F080867	Metagenome	114	N
F085600	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_108122	F085600	AGGAG	MMQTDVKGVTCPVSTDTTAYTGRTRFKGLWYSATGATTIVIKDGSTTLFTFTIGAAGMSSIWIPGEGVVCSTSLVVSVGATCAAVAFYG*
Ga0153698_108129	F009953	AGGAG	LNDYKLLAHVAKEVEKLKEEQAFHLANGRAADIEEYRSICGVIRGLNLAENIINDLVQKMEKSDD*
Ga0153698_108137	F014358	AGGAGG	MLGTDWKECIDCREEIHVSRYQAFCKFCEQDRERSAGEERTSWCVVQEYGKGNYQLVTPASARTTLKQTNQKELRG*
Ga0153698_108138	F038590	GAGG	MTTRPRHVKVDRLSRPIRQTDYLQMLGEAMKFARVEESKPVLNARELPIQTKREVK*
Ga0153698_108145	F070994	GAG	MLGLNGMTATDFKRYIVRWVIDHIKNESGTAQIQVLGYCVYDTKECKTLFEHKDKQVCEKVLQMVLEGVDHGIQK*
Ga0153698_108146	F075680	AGGAG	MGYRSDVVAVFYTQDPNEFPSIKLFIDENIPEWCRGDEYMSTFVGNHDIRGIKFTMSDVKWYPSYPDVKGFEDAIDKFEKLSDGGDKWMWEFVRIGEETQDVEERWGDHSHNLLHVSRTIESDV*
Ga0153698_108148	F053072	N/A	LSRIKLWWFITNVRRYQMVVVDIGYRKLVMTKEKAMALVECLESADVYEEKWWSDDVRKEKGMDSTYTYHVYPNEAHFSMRIVSDSHFQMARLAGKPQEK*
Ga0153698_108150	F080867	AGGA	MDMSMNTLSLSNVVVGEDLQKSMDKEGLKLSGVYGMLDPVISRLASLNPLWTFVINSSTHSMGSSRVASGFMVKLDGEELGSIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPSERISKAKDAAERVVSRAHWNKERERTQHQANVKNEMLVWAETKGHAMFLEYLKAEAIPSLKHKVTTSMEKVELLDTEMKTIEKVQEDFSNNKTALVVKDLGKYLVKIGDNVELYDDNTLPLDMRMKMGMLKLVEDEQYLTDVGCKVTHEIFVLLVDELTNVSEGV*
Ga0153698_108151	F034467	AGGAG	MKEEIRYSSKAIPLRGCNHPKFKWIDAAHTDIRRTFRKARLLIRITKGAAYESRT*
Ga0153698_108154	F006110	AGGA	MPRPKPPEKLIGRQVRMSDRHWLILQQLGGAQWLRELLDKKAPMPKKYYEGLINDNRN*