Scaffold Ga0153698_1073

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1073
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 40723
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (81.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022833	Metagenome	212	Y
F037627	Metagenome	167	N
F049485	Metagenome	146	N
F050983	Metagenome / Metatranscriptome	144	Y
F061646	Metagenome	131	Y
F061649	Metagenome	131	Y
F102396	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_107311	F049485	GGA	MAHSGLQPISNILGSKDTQSLQLWLKRVGASMPDISTVERKIMDNQKKPPYVPQEMKGRMTKNTYKKQGSTEPDWKGSFMYKGEIINFGAWENDAGYGIYYNMKLNDPNWNKQQQQYPKEVTDKPARSYPKDSDVPF*
Ga0153698_10733	F061649	AGGA	MRDQTDCHYPNTRLCLRDCEDGCRARKTVWRKRTIKELQDQELEDEAFARIPQHTYECKHLGICMDRPSHCLDCPSNNA*
Ga0153698_107340	F050983	AGGAG	MSLSTNKIILASAQTNTAGAYFLTTTVTAVSTGNGTVIPAGVYVMFPQANTSVIAYNGSSNATVMAANVGGVVISDGVNVYAKTTASSDVVTLLATNGGQAVSGTYNS*
Ga0153698_10735	F037627	AGG	MKPLICADCKWHIPSKQSSSVANYDRCKASETINLVTGESTYKYCESMRMVSSPCDLDGKLFELNQADEEIPNGN*
Ga0153698_107356	F061646	AGGAG	MQSRYIFDKVNQDITAAIARQVDRDSPTRAHAPTHDDLVCALIFIVSITLLIFL*
Ga0153698_10736	F022833	AGGAG	MATKLQDSLVRKIQENRELKDTIKDLHTQAEKDKEFLRQVQDESNNLELALKKCIHSKAELNDKIEQLTDDLEKYTELYARATLVVTALGEAVFFLTKESSHGKR*
Ga0153698_107364	F102396	AGG	MFFNTKRIEQLEREVIMLEDLFADALKRIMKLEESRWGLKVDGTAKAKPGRKVKNERIS*
Ga0153698_107367	F049485	GGTGG	MPDISTVERKIMEQQKPKFVPLEMKGRMTKNAYKKNDKEPDWKGSFMYKGEVINFGAWENDAGFGTYYNIKLNDPNWNKQQQQYPKEVNSYPKDSDVPF*