Scaffold Ga0153698_1068

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1068
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 41988
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (79.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F034068	Metagenome / Metatranscriptome	175	Y
F052582	Metagenome	142	Y
F083678	Metagenome	112	Y
F091450	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_106823	F009801	AGG	MNECKQEYCDFVGSKAFEDDGGWSYEVWQAAQQAVFKRLAERFRSYGNIDYTGKEIAVYIDFISKQDVP*
Ga0153698_106832	F091450	N/A	MKPKAILEFDYPEDENKLMFALKGADMYATLANIKLAITREFKHKADMEAALMRVRELTDEMLNKLNH*
Ga0153698_106844	F052582	AGGAG	LSKSKTPEPLYRQFTPEADQGKTMVSKYYRVNQNMDGLGVSLHPYLVECNIRIDFGLDGGIYKVEWSNKVLGERKPK*
Ga0153698_106851	F034068	GGAG	MRIRNPKDQDFERIYKAYAGLIEWIGGNDVDGQETLGLLIKAAVALAVTNHLPRDDVLEVVAVTYEMELAMRPKSNEVH*
Ga0153698_106852	F083678	GGAGG	MFKHITPHPWHSSNITVWGYQDQWGYPRVANCKSLSTPMMTQRANARLIAIAPQMYEIIQKMHGNAEAMALVAYMEKSHED*