NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1068

Scaffold Ga0153698_1068


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1068 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)41988
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (79.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009801Metagenome312Y
F034068Metagenome / Metatranscriptome175Y
F052582Metagenome142Y
F083678Metagenome112Y
F091450Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_106823F009801AGGMNECKQEYCDFVGSKAFEDDGGWSYEVWQAAQQAVFKRLAERFRSYGNIDYTGKEIAVYIDFISKQDVP*
Ga0153698_106832F091450N/AMKPKAILEFDYPEDENKLMFALKGADMYATLANIKLAITREFKHKADMEAALMRVRELTDEMLNKLNH*
Ga0153698_106844F052582AGGAGLSKSKTPEPLYRQFTPEADQGKTMVSKYYRVNQNMDGLGVSLHPYLVECNIRIDFGLDGGIYKVEWSNKVLGERKPK*
Ga0153698_106851F034068GGAGMRIRNPKDQDFERIYKAYAGLIEWIGGNDVDGQETLGLLIKAAVALAVTNHLPRDDVLEVVAVTYEMELAMRPKSNEVH*
Ga0153698_106852F083678GGAGGMFKHITPHPWHSSNITVWGYQDQWGYPRVANCKSLSTPMMTQRANARLIAIAPQMYEIIQKMHGNAEAMALVAYMEKSHED*

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