Scaffold Ga0153698_1063

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1063
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 43424
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (66.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F004260	Metagenome / Metatranscriptome	446	Y
F008303	Metagenome / Metatranscriptome	335	Y
F028085	Metagenome	192	Y
F040718	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_106335	F004260	N/A	MNIESQLLNRLKAEQQSFAIEALKRPQTRDTFEYGYRVGMVAGYEASINVLLKLLDEEKNFDNDL*
Ga0153698_106347	F040718	N/A	MLLAELSPDPNYPGLMVCEKDRDEYDPYRLAPRRPDQIVLPFNRPDTPINTHPAGVIQEAGDEFFITEDGDGYLEF*
Ga0153698_10635	F028085	GAGG	MLEMLVNVFVMAAMLALGSILFVFVCAMIGWMVYTAQNGGDDD*
Ga0153698_10638	F008303	GGAGG	MIDRIIISALLGTVGFNGLFPEPSLPLTLKQKAQERSISEMCNKKSKSKTTKGLCKRWKEQQNA*
Ga0153698_10639	F002420	AGGA	MTFRETTVKYIKDILRPKTIYEVICAELQEAHLRKLEAETAAEYAYSAMHYNEDRIKRLESRLLKHTEDGGYK*