Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1062 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1062 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	43560
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (72.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

43560

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (72.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F025980	Metagenome / Metatranscriptome	199	Y
F027776	Metagenome	193	Y
F044360	Metagenome	154	Y
F052463	Metagenome	142	N
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_106210	F079788	GGAG	MDTDDEIESWASIVLGLIASVFFFIGLMAVVAAVCMAWGYFTYQPLCGTVAALFTQECKLT*
Ga0153698_106211	F027776	N/A	MVVCMMNPLEIEIKKTVFAHLPAVGDFGIVDRGDLATMLHTACTEAALAGWARGAEFTQKRMDQECEILRQELKSIQTELAYAKAN*
Ga0153698_106219	F044360	N/A	MVEMELAKMEHEKTWGIDRVIDLVDAEFRRKFNAQRERIWEASQARDEERLEKAIKGMIAAYKALTRWATEAGIEQMPRIDCMEHRMADGSLMVIVRDKQMATWYEQFRKEPGSRSIWTLAELEVVMTGPTLTQVRGIKAAIPSATMVPVTPQGSSGFEEMENDIDISKPFKGGKMFDTKAAERAKNERRT*
Ga0153698_106220	F052463	GGAGG	MPGNPKVRADIALLEDIDDELILSMFEEGRSKADICRGLGIGRRALDTWIADNDYEPIITRARVEAASHLACETLAIADGMDVDNGQRDVQRIRTRQWLAERWDRKTYGTDKAQAVNISIQGLRMEALRHVEVVEQLSTDQMPKLSTE*
Ga0153698_106239	F025980	GGAG	MKFQILMTDEDGNVIYARIDDDGKCRLTCTEKHPEFQEWITQGNTPLPAD*
Ga0153698_10629	F017969	AGGAG	MIHILYIPVLFVCMNGNCEFAQSMRYFSRESECRQAIEDQKETLRKMSLKGGQMVTLIEGTCITLKGGML*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1062

Overview

Ecosystem & Geography

Associated Families

Sequences