Scaffold Ga0153698_1058

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1058
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 44615
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (72.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000649	Metagenome / Metatranscriptome	960	Y
F000961	Metagenome / Metatranscriptome	820	Y
F008072	Metagenome / Metatranscriptome	339	Y
F012212	Metagenome / Metatranscriptome	282	Y
F016782	Metagenome / Metatranscriptome	244	Y
F017814	Metagenome / Metatranscriptome	238	Y
F020318	Metagenome / Metatranscriptome	224	Y
F062555	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_105818	F012212	AGGA	MDTHLLTSAENPWPGTETKTVLVCRKPKADDKLGVNEFVDKDGRICRWVVVNKK*
Ga0153698_105824	F062555	AGGA	VITNNKPQVIIDYALPCMMAEKALKDSHNAVLEQDLDLAMTQAMEAVLQSRVLYTSLRHMKEQQQ*
Ga0153698_10584	F000961	N/A	MNAVEIDPVKYGVLWQKVQDYERRFDEMSIKIDKLENSIEQLVALANQSKGGFWMGMAVISAISSVIGWLSHWLSKG*
Ga0153698_105847	F016782	GGAG	MEPTTTSPTLYAAATEALVSDSSATSTFEKMIQVAFTHSTLETFAKEVKDTESLIRKEFEVSAMPGPWRSAKSVIQSSMKLGLGLVDDNGGFYGKTHLQNKIKEMKLETKDPMTNDEYVDKIMKLLMEVPADIDSAYVYNKIKAYLE*
Ga0153698_105852	F017814	AGGAG	MATQNDFDFNAFNATTERKPAGLQIFLAQQLLSNALWSMEKYDNPRATELRGALADIKALRQLMKDDAIARQAA*
Ga0153698_105856	F000649	GGAGG	VSKNKTHYLPSGKVYKGETHKTGTVLMTGAKHSPTSKVLSHTVPKKKK*
Ga0153698_105859	F008072	N/A	MLGSMPQTAIVTGIPLPTLKSWKCADWFKEFALQLKTEDIQQLDSNLQRIVNKALKATEDRIDFGDAQYDQRTGDIVRIPIKAHVALKISTELLTKQQKLTENPIKEEVEKTIDDRLLKLSEEFAKFASKKLGSVVPIDVEAKVVQA*
Ga0153698_105862	F020318	AGGAG	MALELVSPDSFEEWKFHPVTKRFMKMLMADRETMKEGLINNAFEEEAEVKGRCRVIATILNLEYEDLFENK*