Scaffold Ga0153698_1055

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1055
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 46734
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (83.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041638	Metagenome	159	N
F049482	Metagenome	146	Y
F064498	Metagenome	128	Y
F065547	Metagenome	127	N
F068571	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_105510	F041638	N/A	MAQKNVVAPRLPSPPQEYDPVYMNQLLSLLRLYFNQLDNAGPMAGSTQINGTAVVSGLSFFPTSGTDPSLPTDADFANLRIGDVYRDTQNGVMSNNQTLKIKTAL*
Ga0153698_105520	F049482	AGGAG	MTQTNGKRDYKHAYKLQKKTGETQDQLERQKARGIYDQQGVDRAGKDIDHIKPLRAGGKTVPGNLRLRGKKANQADNGK*
Ga0153698_105530	F065547	GAGG	MNQKKPQRLHERLGMSVEEALNRLIAFGQLHHKHKPIDPKHLEAVLNNTAWKEQK*
Ga0153698_105547	F068571	GGAG	MKTIPRETLRAALRAKFGTGQYRITRDDEVHVYGLMPNARDVGWWLMGDILSAELWLGLHDEVPA*
Ga0153698_105549	F064498	GGAGG	MKKKRWTYTVYYANRVVATFTSRVKAREFMETMTDFDVPFLITPDIANQTPIMIGTLK*