Scaffold Ga0153698_1051

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1051
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 49070
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (28.79%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F040160	Metagenome	162	N
F040698	Metagenome	161	N
F056542	Metagenome / Metatranscriptome	137	Y
F061533	Metagenome	131	N
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_105122	F040698	N/A	MNKTPETPVEKLGRGKGRKKWDMERIETLFMGGAEMSDILKLPEFGQMSRFYLKNCMVKGKWIEKRKRLREQVANVVAPKLEDLMVVETANHYGFMLREIAAERKQIEERHKTGNIKEQSQRLDILAEYEKIATRALGLDENNMHDKKGLSVNAMINLHITGPQKADKIEIVSGEYVREAEESENESELATIEESGEG*
Ga0153698_105125	F015061	N/A	MSEQTPQNETSKSILEAFSFHKCDDETLNERVHAMASLLHTASMMVIKSESRKGEGFEAIKHMELAFFYYRESQFRKRFDKEEEKEEPSRIIS*
Ga0153698_105128	F061533	N/A	MSNQLEGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGMTGVSLEHETYDGKNGKVDRDIIKVTATGKVEFDRPNEEPVRVSAPKVIVTDNPEKALDQIVETHLYIDSLVRMAYLGKITDEETLRAYVSSVFIEANRKGISIGKSEPKSEPKAEEPAALDPKLWAEVTVPSGSHAGKKLGEIGKPALTKLYQFYLAKGFNTPFSKCVEQAAEDFHLDAPIVEEEEVDEIPW*
Ga0153698_105136	F014513	N/A	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKKAWSSQEEYVQICCVDGCFTLPSRYEQIKLAWIGDESASLADEWFNATNAFALQAGNSCHRGITEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRGVTKPITKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPRTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMSNAEIPTAAPIRFSNYSRAENLIGSDLLSPSPNDYFLYR*
Ga0153698_105137	F056542	N/A	MTPLKGTDPRLVSGGSPTRGMIRETMGNKPNLGAKTPSPYSSAPLPKSGKPVGMK*
Ga0153698_105139	F101028	N/A	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVAESVNRTFRGGINRTRPSIRNIPILAGAGQSETIVNDILSGSFQGAYPYRATNYRTSDGMLLSVSGIIYFLKIVNNQAFAYKLIEGNDPGMMHTFFVQAEDRAYIQNGYQNAIAWDGILGTLTASEIQNQDYCEIVSVGTTNFMLIGAPSNTVGIKFTATGSGTGDGTVKIPAYRLNPYLAKMPIGTVMEYAFGRVFVSDKFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVVLTGNGAFSMDVSIPRSQWNTSNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVTNDTPWLKQFASTMFFDNYLISTVAPQTYRAAGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGFRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTTAQGDDYGPNGTRQIDSFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGTVDSYVDFRADSNPCWSQLKVPTTFGCNPCSPVVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN*
Ga0153698_105157	F017989	N/A	MALSQSCFINLTPDQQNYNIYESLKKVAGFDIPAYDEIEISYYGSTNNIETVEYLNVGSLVATLTLQYATQPPTVDDTNLVNITASYP*
Ga0153698_105158	F027487	N/A	MACFTDLDYRNKSYPFVQTIAAAAGIDPISYGCYDAATDSAKLYQFYVGLATIGGLTPVTQNCFVQKTEDQQYYLTNEALAAALTPVG*
Ga0153698_105160	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRAITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDQAWFVPEHTINNEAGYDLCALRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNAGLAAFNEADPATWARLVRVPRYIKTVLENGCAYIPNKAYRNADFGISVAMVNKAMVKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKSLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS*
Ga0153698_105162	F040160	N/A	MTTDKVKSLCAAITSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKAAGKYKEPTDSTIDPDLDEI*
Ga0153698_105165	F021128	AGG	MKLKNKNLAPVGGWWWKYEIKRNGVVYPAIVYGSTWNSLLQNIQKDYRSNGVEIPTNIEQMVEDQTCQRQPSDRCWYNDGLGDRIAQAIHTVAAATDKVLGTKLEHKARGCSSCNKRRNVLNKVLS*