Scaffold Ga0153698_1050

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1050
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 49733
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (86.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001061	Metagenome / Metatranscriptome	789	Y
F002286	Metagenome	574	Y
F002653	Metagenome	539	Y
F010672	Metagenome	300	Y
F021488	Metagenome	218	Y
F023041	Metagenome	211	Y
F061549	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_105023	F000332	GGAG	MRWLILLLLLGLVGAVAKNGCHVREFWSIAWTIHNPSERHQQMSMWLTNNAKFCRSQDYVAIWNNLSEWAGAADSAELRTKVIHGYKDALEREKK*
Ga0153698_105029	F001061	AGG	MAELNATPPNLPLAPTEYQRQYQEQLNNILRLFFRQISNPGDMGGASLHLDIATLPTSADFNTLRSGDVYRDISGGVSTSYPLRIKA*
Ga0153698_105035	F002286	N/A	MAYSQKIIDEVAKTPKSLGNQLGRWAIHHDFPVTKIAYALGVSRQTVYNWFTGTEVFVAYRDRVDFLTHIMKTSHSADEAWRKICTEYNLDPSPRKN*
Ga0153698_105046	F002653	GGAG	VAYEDMMTQEELERRVKGMSDEEQAHFKLLIHKLVMCYGESAGQAVVIIGRAEDQMAGVVTLNCDEMEASQLMLAANDFFGFLNVLDAPPKENFN*
Ga0153698_105052	F021488	GGA	MSDTLFNKEDFESIFGTPKVHMNIDPMVRNAVLEEVALEFDAMRIAFGDTSDSFARYVREMKT*
Ga0153698_105054	F010672	GGAGG	MPDIQTAFKQALSRTLQQWDDEGEPPSVQPVSASFSQPIKPTQEIPMKKMFGITNNISRVTFDYIKNNPGSTRKEIIEALEHQGFNSGSTSSLIAQLRRNGMIHDKDSLYYADAAEYRPLKSLKALKKMEEATPKRKYTKRDVTGIGALLKEKLENMPAVTASEPLLHTTPKQKGFLTTLVRTKSPEDILKDMTVYQAHDLYRHLKEMFGG*
Ga0153698_105055	F023041	AGGAG	MERNTPYDTGKVKIGLLYTQPPPTSTPESEWIQGVLLGDKQGMDDLLLTTIQSIGIIAFIFIVMLLTGGTSNA*
Ga0153698_105057	F061549	GAG	MSYWQTVEVEADSRTDAGNKAFDEFDITKARIGEGEVYDTELIKNALYVVRNHNGTLLGTFSHKDDAEKDAKEYRYQTGNPAYVDEEHGDES*