Scaffold Ga0153698_1046

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1046
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 52656
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (86.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001817	Metagenome / Metatranscriptome	630	Y
F020493	Metagenome	223	Y
F065706	Metagenome / Metatranscriptome	127	Y
F069662	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_104615	F001817	AGGAG	MGMQTDVLSAHLSAAGTLYASNRTRLKGIIVAPKASTAATFEIRTESATGPVLFTMDIASLGTPNTTCILIPGQGIVAKAGLYLTLSVGSITGITVFYG*
Ga0153698_104622	F065706	AGGA	MSEIDYLLNEYKDRIGMLQTALSQGNCTSFEEYRYTCGQIRGLEAACALIADLKQKMEHSDE*
Ga0153698_104662	F020493	GAGG	MKSIPIIVCMWIVFCGLIIYLTELSRKEEVYKLNCELLLGGWHPDVPKDYAKLCEEAKRTMRSDR*
Ga0153698_104665	F069662	GGAG	MDSKKLIPYSVYLPEAHHKKLKEAAKNRKASALIRDAIMMLVDGTDQFKTGYNKGLEDASKIIYDCKEAQMIAIKGKDLGLLLSEQIQSLRN*