Scaffold Ga0153698_1042

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1042
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 54987
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (78.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008750	Metagenome / Metatranscriptome	328	Y
F025942	Metagenome	199	N
F091642	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_10421	F091642	AGGAG	MNEEKFWLCVWGMMLSFLSVVALCITFNAHWKRDKWEKAVSNGADPMVVSCALNDIGGGADAAICAILAQGRNK*
Ga0153698_104251	F025942	AGG	MNNESWVAKNIQPITVLFFLFSYFCFAFLSIFELETRGAYVDLLGQAMIIVITAIFTGKTVEKIVDIRTNKST*
Ga0153698_10427	F008750	AGGA	MRKIKLMELLEQPFKKPAPLQLIAQELADAHLELLTAETGVEYAQSIVDYNKARITRLNSRLNSYKTYDAGQNK*