Scaffold Ga0153698_1030

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1030
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 58814
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (81.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016519	Metagenome / Metatranscriptome	246	N
F041756	Metagenome	159	N
F051078	Metagenome / Metatranscriptome	144	N
F085678	Metagenome	111	Y
F091938	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_10304	F041756	AGGA	MKLHELEDLIMAAWITKEDIDSILWVLMDREKQPDEDELANLLIGLHSLHDARMTKLFNGYDQVLKTNKVTYKGYGISKNPPTL*
Ga0153698_103070	F016519	N/A	MATKRFDKELHDTYDKFGRDIVKSYVSSFWGMEARDNPDRYGVDLHLYKDDLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQEMPTHFFSINKDGTALFHCEAAAVLASEVKESRNKYVYQGELFYKVPLDRLSHVVLPTTSEATPS*
Ga0153698_103072	F091938	N/A	MIVVELRQGIGLDIEFNDTICHIIDDGGPHDKLFSYSGILIKLPFLSIYIGEFEEIGELIKGNKPTGE*
Ga0153698_103076	F085678	N/A	MNVEMLEEHDDGSATYHFDLNWEERNLLLNLGIITALKNGVNEGAKYVGNTDLGYTQCGTPNSVHGEGEQPRESGQP*
Ga0153698_103081	F051078	AGGA	MDSSKSLKPNDIALILRPNIVDGVYTNNFQVLVSGFGPLTISEDSVNNLIGMATILASVIPHMEEDEQLANKLVEYCGKMFADVGDFFYNADHDSFGDGSFTINTKTTGGIQ*