Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1019 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1019 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	62839
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (82.28%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

62839

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (82.28%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001092	Metagenome / Metatranscriptome	780	Y
F001739	Metagenome	643	Y
F001817	Metagenome / Metatranscriptome	630	Y
F017442	Metagenome	240	Y
F017592	Metagenome	239	Y
F032530	Metagenome	179	Y
F041638	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_101919	F032530	AGGAG	MSDTKEMVLLVSNLLVQQAIESRARKPESVWLPHSFEEAEANANLFAKTQLSVTDPERKRNLIRAYDRVKKSRETYSTRSAA*
Ga0153698_101921	F017592	GAGG	MYDDGDYGGIDEFMHWVTVIILFLMTIVFLAGVAGFIWVLI*
Ga0153698_101934	F017442	AGGA	VLSENGNASTTTSSKRKKKPINFYDPFTRVDPKLLEQMYRAAQKEKRKELPEALL*
Ga0153698_101951	F041638	N/A	MAQKNVVAPRLPSPPQEYDPVYMNQLLSLLRLYFNQLDNAGPMAGSTQTNGTDVVSGLSFFPTSGTSPSLPTDADFANLRIGDVYRDTQNGVMSNNQTLKIKTAL*
Ga0153698_101960	F001739	AGGA	MTTFTTTITTMYTLQQPDPNYVVNALWTVTGVDGSNTASIGGNTQFDSQQGAVFVPYDQLTEAQVIGWIPESAITNAQACVQGQIDSMITPPVSPANTALPWSQA*
Ga0153698_101972	F001092	GGA	MATSAGVKRVVQSLKKAGFYDASKSKRLGIIDKLTTKPQRVEMVDKLFLAKKPKGGAS*
Ga0153698_101976	F001817	GGAG	MMQTDVKAAHLTAAGSFMLGRTRLKGIVVSPKVSTAATFEIRDGSASGAILFTMDIASVTVPVNFNITIPGEGILATTGLHLTTSVGTVVGIEVFYG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1019

Overview

Ecosystem & Geography

Associated Families

Sequences