Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1017 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1017 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	63223
Total Scaffold Genes	112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (58.93%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

63223

Total Scaffold Genes

112 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (58.93%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000370	Metagenome / Metatranscriptome	1221	Y
F007570	Metagenome	348	Y
F029676	Metagenome	187	Y
F032193	Metagenome / Metatranscriptome	180	Y
F034568	Metagenome	174	Y
F041003	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_1017104	F041003	GGTGG	MKAWTPPTDYLSLPKPPRHCKYVWLRFDIKTKKFKYPLVRHKQLKNRKRFPFIYIKHYGKCVGINGLTLARVKI*
Ga0153698_1017105	F034568	GAG	MEVKEYGVKKSWDGWRTFAYVSDGTPMGLMPITWANELFKTKQKAKDFIDDLATKNGWKK
Ga0153698_1017110	F029676	GAGG	MGHVNKIFYSYMTTQDAWDEYLGLLRDDDVFAEQWNDTEQDFEEWCKVHEIVLVDTQERVKQLEEAQLE*
Ga0153698_101729	F032193	AGGA	MRGVNSLFRRILDGFRGRTAKTPISTDLNKSPRQVSISEPRTTRMSDASAKGSAKFIPLQNGGSVVARGNKLARSKPTKLY*
Ga0153698_10174	F029676	N/A	MTTQDAWDEYLELIKDDEHFAEQWKDTEDDFQDWCESYDIVLVDTKERANQLEEAQLE*
Ga0153698_101743	F000370	AGGAG	MKSDVKPVICASTESNKVLFTGPTRLRGFMIQSTGVAGTAIINGLANATTVSSSVNTEVYIAVSVGANATETLNLPEDGVLYAARGGKFIVDGIGVTSNTSALNITLFIDK*
Ga0153698_10179	F007570	AGGA	MKEDIKVIKQYIKTFNDRKLREEYKLYTSLEKPTILENYFKDFIKQEIDTRGIGV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1017

Overview

Ecosystem & Geography

Associated Families

Sequences