Scaffold Ga0153698_1016

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1016
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 65450
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (84.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F025685	Metagenome	200	Y
F047462	Metagenome	149	Y
F057986	Metagenome	135	Y
F062555	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_101651	F047462	AGGAG	MGFIKQQLYACRECGDDIDPRRVQLGYRLCLWCGEDAAQADRKSWTVVQEYTKGNYQFITPTAVSTTLRQTNPKNLRS*
Ga0153698_101670	F025685	AGGAG	MKYIADFFALIGLVSTIIVAGFYLGYTTYQPKCYTVASVFTKECK*
Ga0153698_101672	F057986	AGGAG	MIDIYKRLTTTPTPLEMAARELVEAQRDKLKAESALDYAYSMVDYNNQRIERLRIRLTELKGEQA*
Ga0153698_101679	F007519	AGGA	MTTGIEYLKPEKKRKGRGPSKKPSLFATSLRLPRNVLDYFSTNHPYTKQAKIREILTEYVTNQQQGASNGNT*
Ga0153698_101684	F062555	GGAG	MATAEIIDYAKPCMDAEKALKDAHNAVLDGKLEQAMTHTMDAVICARLMYGALRHMKEQQQ*