Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1013 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1013 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	65929
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	74 (80.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

65929

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

74 (80.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F001715	Metagenome / Metatranscriptome	647	Y
F011292	Metagenome / Metatranscriptome	292	Y
F027781	Metagenome / Metatranscriptome	193	Y
F081271	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_101316	F001629	N/A	MEQNMILSQGKLADGLVDDLLAVVHKYDETLYMSTVIGVLELVKQQLIHDSIEDDDD*
Ga0153698_101318	F011292	GGAG	MTPKSFDIDTAKEIVGDERMRVIEAKARQDADNGVMDKPVRAEGSYWDVRRSDMEYIVYITTHHKRMERIARMKEKNNA*
Ga0153698_101327	F081271	GGAG	MSRYILAGFESEELEQKIKDHQAFALVRELNFKYNLKVLGTTEYLLEQGTAFQMCHTNGMAVGKVFVRAIEDGKLEYCYRTPYYKKERGSSEEDKETLRSVKVSSLMSTIKRVGAIIDIPKLLGKKMGKLSDAKDIMEKAMGSAYKSTGELSPNEIQALICAYLGESPSGNHITIDTLKCKIVLDKYNEADRVQVKKLEEVGRFFHNPFYMIGADSFGHFIVGKVKVTGEKQYDIVEPFKRYKDITERDDLIPVMTMTKLAYEGKGHRLQNSYIPVQDIYDENLDAVFFYHSQATHYDYVWMATPC*
Ga0153698_101336	F027781	GGAG	MNMELSKPKHLISLASSAVLVSVDANVWSATKQDRGISNDIADSKRANRSAGKYVKNLLADHPKHKALVNYRQTIYNWVKRRTYRWNNSQDLLPSIDVPKFKQEFGEHKASFNKLLVDFISSYDEIVSDMAFKAGDMFDRLDYPPKDALVHKFGVELYVSEVPMSDFRCGIANDIADDLFTTYSKQAEDIVSSIVTEQKSRFIEVMQSISHCCGYDELGVDDNTGETKVRKRKIYDTTIQKALEMCETFKGFNLSDDPELEVARASLERALADVDAKSIRESDAVRSSVKEDVDSILSKFSSFQCV*
Ga0153698_101347	F001715	GGAG	MPDMEQIMPYIEENIPLPKNASDAFPDLSPSEELTMRANVVKLMSDLTGNPLVPSQENADQAKALARQMISDPTLRPDFSKYPNETLAMLAGMVAQMNVSIVEELSDLKMYVVNKLVAEIESAKDAKTRVAALSKLGEIDGVDAFKKRSEVTHKIMSIEEVEKELLETLNKLEDKAIDIEAREIVLKKE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1013

Overview

Ecosystem & Geography

Associated Families

Sequences