NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1013

Scaffold Ga0153698_1013


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1013 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)65929
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (80.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F001715Metagenome / Metatranscriptome647Y
F011292Metagenome / Metatranscriptome292Y
F027781Metagenome / Metatranscriptome193Y
F081271Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_101316F001629N/AMEQNMILSQGKLADGLVDDLLAVVHKYDETLYMSTVIGVLELVKQQLIHDSIEDDDD*
Ga0153698_101318F011292GGAGMTPKSFDIDTAKEIVGDERMRVIEAKARQDADNGVMDKPVRAEGSYWDVRRSDMEYIVYITTHHKRMERIARMKEKNNA*
Ga0153698_101327F081271GGAGMSRYILAGFESEELEQKIKDHQAFALVRELNFKYNLKVLGTTEYLLEQGTAFQMCHTNGMAVGKVFVRAIEDGKLEYCYRTPYYKKERGSSEEDKETLRSVKVSSLMSTIKRVGAIIDIPKLLGKKMGKLSDAKDIMEKAMGSAYKSTGELSPNEIQALICAYLGESPSGNHITIDTLKCKIVLDKYNEADRVQVKKLEEVGRFFHNPFYMIGADSFGHFIVGKVKVTGEKQYDIVEPFKRYKDITERDDLIPVMTMTKLAYEGKGHRLQNSYIPVQDIYDENLDAVFFYHSQATHYDYVWMATPC*
Ga0153698_101336F027781GGAGMNMELSKPKHLISLASSAVLVSVDANVWSATKQDRGISNDIADSKRANRSAGKYVKNLLADHPKHKALVNYRQTIYNWVKRRTYRWNNSQDLLPSIDVPKFKQEFGEHKASFNKLLVDFISSYDEIVSDMAFKAGDMFDRLDYPPKDALVHKFGVELYVSEVPMSDFRCGIANDIADDLFTTYSKQAEDIVSSIVTEQKSRFIEVMQSISHCCGYDELGVDDNTGETKVRKRKIYDTTIQKALEMCETFKGFNLSDDPELEVARASLERALADVDAKSIRESDAVRSSVKEDVDSILSKFSSFQCV*
Ga0153698_101347F001715GGAGMPDMEQIMPYIEENIPLPKNASDAFPDLSPSEELTMRANVVKLMSDLTGNPLVPSQENADQAKALARQMISDPTLRPDFSKYPNETLAMLAGMVAQMNVSIVEELSDLKMYVVNKLVAEIESAKDAKTRVAALSKLGEIDGVDAFKKRSEVTHKIMSIEEVEKELLETLNKLEDKAIDIEAREIVLKKE*

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