Scaffold Ga0153698_1007

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1007
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 80536
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (8.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F006215	Metagenome / Metatranscriptome	378	Y
F006840	Metagenome / Metatranscriptome	363	Y
F030735	Metagenome / Metatranscriptome	184	Y
F038206	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_10073	F038206	N/A	MFIPVVFKDKDGSYIEHINVTHITRLSFVNSLNPDAGTNIHLRTGEVLVTQSPMDVMSERIDNSWQCAASLVIFNVIAEKAKMEIDENPKTANKL*
Ga0153698_100742	F000716	N/A	MEKLKQQIKDYQLYAGKTYMQYETDSYSEYQNYLYKRALYGLSALSEQELATMCSKKRQRVINVYKRAQVVINKLKQEFTIQYTNLLFKTLFPNSPLTDALLANTETDDKFKNTLTFKDLGIEKKDIISIFIAEGVLPKNFLSLERDPNQLPRLKHEVKSM*
Ga0153698_100762	F030735	N/A	MIAQIIFIWYFITGTVVYQQDVDGRDTYALFFPDGKVVDYAYKAEIIEYIETGTFEYDETLEDKVTDADKGE*
Ga0153698_100769	F006840	AGCAG	MAQFKKLRGRTILLDVPQRKESSIQLSAKDEDAIMADAVKMWNKLTVFAIGDKVEEVAVGDQVYVRTAALNMEHVERIDIDGSVKLVLNEGDVVIIW*
Ga0153698_100776	F006215	N/A	MIITGYKYTIEQDAIDAREQCDTYYGIPVSPEDVTQNWCDYETANLDTPIFYYIRFDESLRVVLGDPGTFEVTVLNPF*