NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1003

Scaffold Ga0153698_1003


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1003 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)115569
Total Scaffold Genes183 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (22.95%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010317Metagenome / Metatranscriptome305Y
F016527Metagenome / Metatranscriptome246N
F016959Metagenome / Metatranscriptome243N
F016969Metagenome / Metatranscriptome243Y
F025652Metagenome200N
F027823Metagenome / Metatranscriptome193Y
F028808Metagenome / Metatranscriptome190N
F029414Metagenome / Metatranscriptome188Y
F029718Metagenome / Metatranscriptome187Y
F036553Metagenome169N
F038644Metagenome / Metatranscriptome165Y
F040095Metagenome / Metatranscriptome162Y
F041755Metagenome / Metatranscriptome159Y
F041771Metagenome159N
F055722Metagenome138N
F093866Metagenome / Metatranscriptome106N
F100474Metagenome / Metatranscriptome102N
F103118Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_1003116F036553GGAMNDIDLYTKYSITNKYWNLSKQTNVHYVGIGALIRGLYAIQKLGSNVGLPPYGNSKLLPFDVEFECAKLDDKIRNYYYRTIIPQCLFSNDDYKNLGIYNTDPWLRAFPIYMTGDYNNRYVDAYASIDALKNNSSCVYSYVLFYKDRLIRSNSRSNLMSGSVPLAIMHVTTLEGKPIVCVDITH*
Ga0153698_1003125F010317N/AMSKQIYIEKLAEVTGGLPAIKMEEHIAGESQGDNYSIPIEYNLEGYLLYEIEVGKNVIIDRLKRNGVEVRGVFTTSRVTEVGDKYFKTQNSVYKYSFL*
Ga0153698_1003126F038644N/AVSSIKITQLPNGPWREYALEAQRRGLEKISDCRLSGTDVILIGAIDMIRELNEKITKLESKSE*
Ga0153698_1003127F027823N/AVNVTAAINVPCVSQTNLWKGCFEDHFLSGKEIDAKYPILNTKWKYSHHKLRDGYDGYYYAYEKDIGTGIMFDPWLREFKVNMPIADDVYKSKMYYTTVESNLILLVVYKKKD*
Ga0153698_1003128F041755N/AMNVTATKISGEEIHKKYPITNTKWKYSNREYDWNDNNGYYYSNYKDWITEIITDPWRRNLINNDNPINRTELYSIFSTTVEGNKIILIIYLKTYR*
Ga0153698_1003145F100474GGAMTDTEYIKKLEEALYDSLTLNINWVVTALKSDLEYHSEYAAVIKQAKEALKLSKNPKMHNI*
Ga0153698_1003146F029718N/AMKFKVSYYDYVTDKHLTKDCDRMDFSNGDYQFSFYPVDNPVKIYKAITIDHPKIKVHQNQQWGIKIIVTGYQCMKDGDYWKTDTTFESVKED*
Ga0153698_1003167F016959AGGAMNKPQWPTLQDRLNHPLKDELTALQQLKQVLPLSKQAQELYDKLSKESIQEARNNAGRTNKI*
Ga0153698_1003171F040095GGAMRLYSKKNKEDLFDIFDVDISVPKIKWGTQTGNAWGNDYPTKVIDINLDTKLVYRKDKTYWYFQLTLLGFGFTITRQTGY*
Ga0153698_1003179F055722N/AMNLIYQQINKHKYSVRTNNGKLVGDLFIDVDGHFYFWPEDNNGAWSSSHLRELADKMDEINKSWDEQLNK*
Ga0153698_100318F041771N/AMKIDILKEFIKKTVQQEVRSVVQSELKLQLAEIFSKEVIQAKKKSAVSSESDLEQQILKELDVMNESDVVEEQVKPTKKFVKYTSNPMLNDILNQTTGGVPQEGSMVSMMGGYGGGTQEVITETKVPENAPAPVKGVYSAINRDYRALLKAVDSKKSKV*
Ga0153698_1003180F025652GAGMNNKTYFYRVAHKNCSFYGRYPMGPYTFFNTNLWSVNNQKVPFSDCAYKKFVEFVSKEVVEYKKFNIANNKLKWVPTLPNAWRPGPFEDIDLREKMILRMGTMTKNGKFHLYGFDSLMQALQWYNNQEELQFLEDNQFRMYKFKIKSKNMIVGKTQSVYFPDINDNMDMLWISSIKLTDMNKSININNTNHKQIYR*
Ga0153698_100338F016969N/AMSNIKLTKTEAEKKVYQLTEDLLHVKKDFKDVASGYKDRMKEIESEIKAIVEEASSGDPTK*
Ga0153698_100339F028808N/AMMKRYSLLYESSIYDYLVWDPTGKLKYIADELDKIPTDSTKLYRGMSEKEYNILKSTGKVTSKGRGNTRNIVGSYLASDFKLAARFALVNYRDKGEGIVVVIDKSKLPDLKNVDTGNYVTSYIPIESVSKIIDLKKL*
Ga0153698_100352F016527AGGAMKKVLVLLSVLAALAVSAGDTSNISVEAGYNNQYIVNGVSRSEGAAFVGVGAVKSLKYADVYLGGTLLANGDLDQSHWTLGAGKEVNVWKDVFSARLDTTVTRHQAGNFGIPNSTEFGVKLALPNKFVTPYLRGFYDVDLKQSGVFIGAERAQKLPFGFVVTPAVEYGKVEDYTAVNAKLSVTRPFETSFGVLTPFASAGWYDNNFNATKYNWATRELSGDVVYSGGLRLTF*
Ga0153698_100353F093866N/AMNELSKIDMANLVFSNDKKAKIKDVLCTKYGATDVQYRDLSYGICIDVVGTDSFRFVKSTILETLDVHEETLSILGESKRSLKASYVYLPEKDKILNKRLKKVKSV*
Ga0153698_100356F029414N/AMILLKDLLKEESGGLTVYRGVNPAYGNVGLGINSTKPGDKLVATLGANHTDNLEVAKRFGKQIITTKLKGPVLELPHYNDIINLYKQYERMLPFGLAGKIKNSGGQEQLDLIQLAGNELRKILSKKYGYIKSPLAISDANYLTQKGLTGDLYIPLK*
Ga0153698_100370F103118N/AMHNTVLMILSVRNSKSFEESVNKLQCEKIWFKGYREHELSPIVNDFVRNSNFENYFITPDDLIIKPHQFEKLKLSLNHNDIVSGWGVIRQNCTHTTITKPHNFLQTNIFKHQFTSHGFKNQQYNFSYKTHEINSLPNEIETAFTGWFYTGMKKHIWTQYPYECLNPPFASSDLMFSRRVLFDNKYKQICIKSANVIHLSNSTTMPTDKSFFDMSTCFSNKSITKTF*
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