Scaffold Ga0153697_1579

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1579
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10447
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F040698	Metagenome	161	N
F061533	Metagenome	131	N
F094938	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_157911	F040698	N/A	MNKTPEIDAKTLGRGKRKKWDMDKIEGLFMGGAEMSDILKLPEFSLMSKFYLKNCMVKGKWIEKRKRLREEVANVVAPKLEDAMASETIAHYAFMLREIAAERVQIETRHKSGNIKDQAQRLDVLAEYEKIATRALGLDENNMHDKKGLSVNAMISLHVSGPTKADKVEIVSTQYVDGSEDLESDEKSDTE*
Ga0153697_15792	F094938	N/A	MKDKPTTTEIEVKTEVKTESKPVVDSALKREIYLRLISASAADGKFDLGKLPNAKAVVNQGDHLRGVAELLTQCLK*
Ga0153697_15795	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGEIEIDGQTYGLKFFNNTQEQSIKNNVVTLCSVRGKHGLTGVTLEHESYEGKNGKVDRDIIKVTATGKLEFESEEPARVTSTPKVIVNDNPVEALDKIVELHKYVDSLVRHAYKGVEDEETLRAYVSSVFIEANRKGIAFKSEVKAEPKAEPKVVEQELDPADWASAVVPSGTQKGKKLAEIGKPALTKLYEFYLEKGFSTPFAKCVEQAAADLDLDAPFPADDIPY*
Ga0153697_15798	F015061	N/A	MSEKNQQNETSKAVLEAFTFLKSGDETLNERVHAMASLLHTAAMMVIKSESRKGEGFECIKFLELAFMYYQNAQFRKRFDTEEKEEETPRIIT*