Scaffold Ga0153697_1553

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153697_1553

Scaffold Ga0153697_1553

Overview

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1553 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	10837
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F085598	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_155314	F006740	AGGAG	MPNFESWSHENLAKFAAEAYVKMQEQHDLIQHLQNDLKDAIKAYRELIK*
Ga0153697_15538	F085598	GGAGG	VRLLKWKTQLKAEKSIHKIYQRDFNAAWRKLSKSVKTIKQLEDKIATHLATTK*

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