Scaffold Ga0153697_1534

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1534
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11122
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F009883	Metagenome / Metatranscriptome	311	Y
F010982	Metagenome	296	N
F095153	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_153414	F095153	AGGA	MTEAITAIGLIAATTVSSIAALYAAKSEKNSRPVSNGFADEIRSDVREIRSLMIEHLKNHK*
Ga0153697_153415	F009883	GGAG	MNEISIVIAMTLAGALWALMAYSVGYKEGERVGYSRGRAVNRHMSNKVAN*
Ga0153697_153417	F000403	N/A	METTNMSDYVEIIDPKTRMCKLLYNGEVVQEYQVEQCDKCSSFQKFDSFGYQKGYGNEKIIWFCGGCR*
Ga0153697_153418	F010982	GGTGG	MILVRLSRADEIIAANAGLARESRYGSNPKFKSNKGNFHHAVTIHSEAAGAEIAAARYFGIEDFIPTVDTFKNEPDLRFGALGIEVKQTGHKAGHLIITDDDRDTDVAVLVVGESPTYYVVGWIPVSVAKKPRYQASDGSYWVSQINLQPIENLKRSQYANSGI*