Scaffold Ga0153697_1523

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1523
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11217
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001338	Metagenome / Metatranscriptome	719	Y
F001780	Metagenome / Metatranscriptome	635	Y
F001923	Metagenome / Metatranscriptome	617	Y
F002413	Metagenome / Metatranscriptome	561	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F004790	Metagenome / Metatranscriptome	423	Y
F019449	Metagenome / Metatranscriptome	229	Y
F026553	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_15231	F019449	N/A	KDTATTEIYTTIVVPGIASVAYASAGIACFFAHRPALAVMWLCYSIANICLLSTVLRK*
Ga0153697_152317	F001338	N/A	MTTENNDRPPLTSISTNGTYKLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATAAEYLEYIGPACGQTILVGVEVEENGEYNGKPQYKYKLTYPKGSQKPTVPDALPPEGVNF*
Ga0153697_152318	F002413	N/A	MAAPTLVLISGFSRAGTDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLEGNFMAEDFKCENRDALVAMGRFARRLDKDVFARHFANWVPVMKHHDQVAPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGVGPANDEELDSIAEIRAAHLFDQEYIFKPNARQQIMSEGRILAKSWRL*
Ga0153697_152319	F004790	N/A	METLTQETLIWARKVGLSPDRVAFLLTCPKYTVSKGHRKSDRVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGGDLLTARQRRDEMLAAFDSGQPIPHLNNK*
Ga0153697_15232	F001923	N/A	MSPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVVRRVLAAAITAALVGYAIADHIESPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGTAKKPHGKSKAPAKGKRKR*
Ga0153697_152323	F026553	N/A	MNQRKPRVLSPKQLRFLAYKRRWTKIRLKAWKTMPEKMEANRVEATKQAAKKKHGYNEAIREEMKTWPKTLSTDVLREHISQSLDYSGKVTSLIYRMRRHGMIDFQLDGLWLNLCHLPA*
Ga0153697_152324	F001780	N/A	VTKASINDLTAPTKEAKSFDAWFFAQPKKVQEKMRESGVLPYREMVQSRHVFCIDANHPKWAFNPTTDEHRTEVDSFISRDHVGVMLKAFMDALSLTNSFHFRRHVELIRWALSLPGCLDSRTIARMYGRSHIWAQKRARQIRSSVNGDACGLFPPHINSRRDKHKMPRT*
Ga0153697_15233	F003583	N/A	MAKAKPLPKESGSANLLLAVTLLTAFAGVAALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGLAVFLRSRRQKAS*
Ga0153697_15235	F003714	N/A	MPNARHPYTETVTFAGRILPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNLKRRGPYSSRA*
Ga0153697_15237	F000957	GGA	MSSFKHLDGMRNLILEIYEVNERIMTGDICSAKSAIASTNLKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFVAGSQVPRRV*