Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1519 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1519 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11280
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (80.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11280

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (80.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y
F038999	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_151914	F003212	GAGG	MKDKWLVTLEIDTYDGDPRKWDWDYIFTGEDDVKAISSEFKGRVLPTSEGESNE*
Ga0153697_151915	F000821	GGAG	MNEEYLKAKFDLCINQAEKDLQAQDIARAIKNLQRANSAMSRLFGLESEDESE*
Ga0153697_151916	F001477	N/A	MAVGMGGTTMSKEFITKAHYPDSNIYTIHPPKSELILFYEVVEKDGDNTWGGANAEQAIQWLVNSPSGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL*
Ga0153697_151917	F003863	GGAGG	MESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWVISSNSRLTVGIHTRANNTPAIADPGDAGADEGNNGGEA*
Ga0153697_151918	F017972	GGAGG	VKTKHLQLVTSKHSVTTHIRESVRSYYGPVSPGSTTLLAQETLRVNQLAQLSELLSSLESVVESLNYKSFTLYDTLNTAIEAVSVALNDTQIESVGTKDC*
Ga0153697_15196	F038999	GGAG	MTTTQNETAKLSFPCSCNGCRNYPTRPGEVWHESQIASKAQGYFFTPETMRFFKSRIADFKPVGISPSGVASLMVIVSNKRDDDPRYYEIVTLCPYGELAREWAKDSDGSPITSYESLSKARKSARWNCSIAAQICDCHGCQLDRAGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1519

Overview

Ecosystem & Geography

Associated Families

Sequences