Scaffold Ga0153697_1456

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1456
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12404
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_145611	F005814	N/A	MELDLLSSRINLNHTCLKLQVSIEDIKTKHPNRTDLINSMEQSLHEIKKAMVVYGTLEKEFRAARQMNFNLERLNLEQKQELQNFKRQIELNNMEL*
Ga0153697_145622	F006463	N/A	MTSGTTYEQLDWWQRQWRGSFDLGLYLEICRIKKNEHTKYKPMKRFKATYKTYAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIILEIKQIEK*
Ga0153697_145623	F009958	N/A	MKNRILEIHNREWNLNYEFAGWEFSIAGTWEFNDYDEVSEYAFIELDVEISQKWLIETDDHLQPHVLGVRLLEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYYEL*
Ga0153697_145624	F034772	N/A	MKNLIDYFTPTTEEHKSFLRHFLGTLTMFIVFGGMFYCLMYLKTL*