Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1441 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1441 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	12561
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12561

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F029096	Metagenome	189	Y
F048270	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_144112	F029096	GGA	MAMAEGRTTITVRPDLADYRGLLKALNVMEKESQVELKDDVYSISAWTATGIKQAAFGHPYYPKQAAIAAATVRPARDRVPTVYIGGTKGRASGGANAGQILFGNEFGGDRNAFGNLNAFPNGGYRFPPRTAREGRGNKGYWIFPTLKAMQPEIKKRWFTAVNKVMDNWARTS*
Ga0153697_144113	F009265	AGG	MQYDIKTKQGNNYIVSDESTWLWIEIERDLGYTVTQAAEKMSQGSLDVITCMLYKASKAAGHTKMPSQQAWVTNEFEGFEVVEESPKEN*
Ga0153697_144114	F009526	AGG	MPATYITGRSLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAAKNAPDTSLAFSFDVNGDTFTGNVFPVFPTVGGAATDVLTTSLSFVVEDGTVARA*
Ga0153697_144115	F009746	AGG	LANLATYRANLAATLAAAGRVVYAYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITAIVNAADNQAALANIETLIFSITDLLANNISFLGGWSQPTVQQIGNADMLISQLSIEMVTTN*
Ga0153697_144116	F009679	AGGA	MALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDAAIKAVSLTGNVATFYCYENSYVAGQALTVTGCGSPFNGSRTVIDSYTGPGEPYFTAAITNADITRRNIVPSGRAVLTSQAALYDATPEVREAALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG*
Ga0153697_14416	F048270	N/A	MPGQSLNDMSQIVMAGTVAGALIAILTLGGMIVKWGIVKPIKAYINQMTYSIQPYANGGKSLPDLINKVDALHVVVQNHLTTSHNTPISPTCLCKSDWHA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1441

Overview

Ecosystem & Geography

Associated Families

Sequences