Scaffold Ga0153697_1415

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1415
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13178
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (33.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F015354	Metagenome / Metatranscriptome	255	Y
F016141	Metagenome / Metatranscriptome	249	Y
F023295	Metagenome / Metatranscriptome	210	Y
F024095	Metagenome / Metatranscriptome	207	Y
F035672	Metagenome / Metatranscriptome	171	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y
F067530	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_141511	F067530	N/A	MQILTLNLDPATANALITALEVARRQGDFAVARTAVSIISELIRQDEEFKKLTPPVQAQTAE*
Ga0153697_141515	F024095	N/A	MDNTNSLPFVYVVTAALGAAVGATGSSTLIMQADSRFELMGIFGTGGTAATTEDSLFYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFQQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIIL*
Ga0153697_141516	F016141	AGGA	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALTNGAMEQLQTVLNLGVLEISFAQKLYYQIARPFVQCPSGFGIDIQSLASSRTGNAAETQAPGTNWSARSDHRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGPQTPAIELGLIFDGYVIRPSQ*
Ga0153697_141517	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYITYPTAGTTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIASNDVDGFTRANQASLDTRALASDYLGGFVQAGVLRFSVGARPFATIVKPFQYAPPPGSPLDYDNTYVNQISAAPVPAAGAAQVVGVPWITQTKMRSNVYFVDPNILIEAEQQFNVSLQFPSGVVPILASNVVNNDTNPLKVGVILDGLLLRPVQ*
Ga0153697_14154	F048257	GGA	MTAFPSSVAARKLLKGENYTDSAFYVLRRTLLIRSGLRLAGEEKDLWKKSLYGSLAVQAFVTAWTATHMDEPVASLPSGEVAVAGDAVGILGTYLLRSAIVGTGLWLSGERKNLTRNTLISTALIQASVMLWAKDQEV*
Ga0153697_14156	F063343	N/A	MNYLILAGIMALFIFGQKVRTNWVSGIKSTLTKLMVPGADRRLFSGFTASPLSFIRNAASWVRVFNWTGCAAGINGLGGVGGGTLISRRHVLFANHVPYPDRPFDIFFANKDSRTFTYKVTNIQQVGDTDIAIGTLDRDVDPSLNVYRVLPDSWAQYIANKAESFNVMGVTGTSYALVLPVLYVNQDKKVSTADVYSIMSGTAAVGIPAFEVARAFGDGVRGGDSGNPIFAMLGDELVLLGAWHQGKSGDQIGAFPWLAAQKPAIEKIIGQKLLVADMSGLTKV*
Ga0153697_14157	F023295	AGGCGG	VLLSMLQSMGCATKVILVPEGQPVQLAEPVRAKVYAFDATGKLVPSSNRVVLPAGWYVLPRK*
Ga0153697_14158	F015354	N/A	MNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELAGAIVTIAGVVLSILKNKKPATPPPAA*
Ga0153697_14159	F035672	AGG	MNFHDSLRDLGIGVGGPAGGLLVANIVPDPLVAHISVTLGALAALSVIIKNVLDIWSNRNK*