Scaffold Ga0153697_1409

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1409
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13352
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_14091	F076091	N/A	LAYKAQALADLGLAVTSYSDSGTSVNKQFGLPPATRILEINYALSRISPTLYGGAHTSIQVNWDSRVDL*
Ga0153697_14096	F085382	N/A	MSIYDTFLPDFQGLLADIGVPATVGANLFLVGLSRPMNTPKFDSGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATLAAGVPIAALGEGKKFTVNGQVLRIKGQSYKQTSAVIELECVDDNQ*
Ga0153697_14098	F082694	N/A	MGTKSSRQILEAAIASHLSAQTELAGVSIYTGDGADINVLPKAIVLCDSARAPNDMPQGLGNYSCGTRVTVFSSADDNTLAEHRARCAAVAGAMQDLTAIQAVFVAGGDALCYDVTPQSEDEGVNERSWASVFSYDILIVVNPQP*