Scaffold Ga0153697_1398

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1398
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13819
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F005452	Metagenome / Metatranscriptome	400	N
F010982	Metagenome	296	N
F047681	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_139812	F001731	N/A	MSVFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNIELINLDQSNVIISINDAITIELQDSTATFIPIFGGSVVEVGISVAELGNVAYAQRIKIIALGALARLPKALTNGVLAQDFDGNQILTILTDLLLNQWNEVPAALQWNTYDPTTQWQDAENTGLGEIDTPGNYELAQRSSSRTDMYSLVAALATSGLGYIYENAQGQISYADSTHRSIYLATNGYVNLSANNAQGSGLTIQSRTGDVRNTITLKYNTNSTSEVSAANPASVTLYGQLAQIFTTTIKHQADAQDQADFYLTLRAFPQYNFNQITYQLTNPEIDDGDRDSLINVFMGMPVAIADLPLNMSSGTYLGFVEGWTFQAAYNQISVSLNLSPLAYSLQAMQWQDVSVAEAWNTISGILDWEHALVVA*
Ga0153697_139817	F005452	GAG	MTIEADIRTPLQSSLTSIAANVYNGIPETMTSPSIVLVPGSPYMESVLINGSVTKLKLNYLITGVVGYSSNAAAMTNLEDLMVSIISTMPGGYVVGDVSTFSPLEVGTGKFLTSDLQVSTYYTD*
Ga0153697_139818	F047681	AGAAGG	MPQIVTQQELRDILGVSVSLYSNAYLEQMIESAELTILPLLTGYQSAVVSVFVEDSIAYYTTQRVNYFVPGQSVVITGCGDYDATVTVTDDRIAPFVFTSATGEADSTYTIPIIPAGLACIDGATAGDLYSGVAPIKSAILVVSVEVFQSVTAPGNQIMSDSFQPSPFILGRSLSSRIVGLLGPFLEVETMCL*
Ga0153697_13983	F010982	GGA	MIMVRLSRADEIVAHTAGLARESTYGSNPKFQGNKGNFHNAVVIHSEAAGAEIAVARYLGIDGFTPTINTFKNEPDINWDGVAIEVKQTAHRNGHFIVSNDDRDSDMGILVVGESPTYYIAGWIPVGVAKRSRFASSSGGWWVSQVNLQPIENLLKSHHAPAAI*
Ga0153697_13984	F000403	N/A	MSDYVEIISPRTMTCKILKDMEVVEEYKIEQCDKCSQLKRLDPFGYQKGYDNLENVIWFCVDCR*