Scaffold Ga0153697_1387

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1387
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13938
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020322	Metagenome	224	N
F043821	Metagenome	155	N
F067730	Metagenome	125	N
F069708	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_138715	F069708	GAG	VIYTGTTDGAAAGKRPGTEKFVDIICKKGFTNLGTWAVRNMRGSDRLSVHATGRAADIGYKDKATAALWANWLVANYKILGIEEVHDYAGTTKKGCEKWGRGWRCNRDGKPGWKDWTETANGGSGGGLWLHVELTPAMADNPQAFVEAWKSVPRPA*
Ga0153697_138720	F020322	GGAGG	LSDDQIWNAFISAIPAQDRARHDLENFQARLLKNALQEIEDLKLEIVQHRAEIVQLEEVLQGYSSLLHDVTQDRDRYRDDWKAMVQDASRWKKN*
Ga0153697_138721	F043821	AGGA	MEEKLMAIMTEDDYYEVKVYPKGNRIVLRFVGDCWDKYNWEMTYNTYVAPLVRRYSNDWMTWGDRITLTHGYYVWTWEPAVLDIKGDG*
Ga0153697_13878	F067730	AGG	MTATIRTELVGVRQAVASLNKIEPGLRKEFAAQLTAIAAPAIQAAQSRYTSLGVPLSGMARPWSNNGRKLFPFDPAKAAKGVKVKLDTRRNATSTIVISQGDAAAAIFETAGRKNSNTLATNLGKTPAQGRTRLFGPAVYSKIREVTKEMERATLQVISRVNRELQ*