Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1370 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1370 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14332
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14332

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F005587	Metagenome / Metatranscriptome	395	Y
F006539	Metagenome / Metatranscriptome	370	Y
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_137011	F000468	AGTAGG	MTVWSPVWKLTVAGTEYTNIAISDIQHQAGRTDIYQQPNPSYMQVSFVALSGQTLPFAINDSFGLQVKNSAGTYVNIFGGDITDITVSVGATGSVATVVQYTVLAMGSLVKLAKELYSGTIAQDEDGNQIYDLLSSVLLGSWNDVPAATTWAGYNATETWANALNLGLGEIDQPGLYTMENRAADVDTIFNIAQLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLDARHALGQGISTITRSGDIRNDIYINYGNNFGSQKTATSTTSIATYGYKAESIQSVLHSGVDAQAVADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPTQISSGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPITEAWNTLSPTLTWEYATIVA*
Ga0153697_137013	F005587	GGA	MSDYLAKAINKLKPNAQFSYSDYDYSTIKWDVLDGDAPTQKEIDAAIKQVKADELAEAKAKAANKQAILDRIGLTADELKTILG*
Ga0153697_137019	F006539	GGA	MIETTAPWIVLYCILGYFISWGIYSTIKDNAFQSGYWKGRKDGFDMHRRITDAKRDQVFDYDKN*
Ga0153697_137021	F002357	GGAG	MAFNLEDYEDVATLNKWFIQNFPLGRSDISVISHDPKEGYILVQATLWRDSKDTAPAVSNIAFGSRETYMPNMKKWYVEDTASSSLGRAIIILKGSNKTATKDSIKQVDVEPNQYEKKLAERRYSPPATRSAAVEDALRASFAVENKENDPAQWTVSEVVDQIASATPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCEPKWAKITANGKWYFEGGE*
Ga0153697_137023	F042333	GAG	MDGYNTAEGFRVYQCLKCCAIGTKNLAEATDTQEPVIRCTKCGAWMFVDKPCHTCLLIAAK*
Ga0153697_13705	F001834	AGG	MPNQTILEQIRTPLATALSSVAGNVYSFVPETVIPPAVVVVPDSPYLEFETISKANIRAKINFTISVAVAYNSNPASLDNIEQLVISVLAVIPSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1370

Overview

Ecosystem & Geography

Associated Families

Sequences