Scaffold Ga0153697_1360

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1360
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14548
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y
F023340	Metagenome	210	N
F035760	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_136010	F004670	AGGA	MQKIIFDLPLFRSTDPETSRQVTPMKVGSHRAILLAIYADATLGLTDEEAALRASAQGHEIKGYWKRCSDLRTAGLIHDLGIRRTLSSGSQGIVCAVTQSGLDMVRGWA*
Ga0153697_136011	F035760	N/A	MKYTGYDKTATAKMAGTEKFVELCARRWSFKNLGTLVVRQMRSGQGMSVHSTARGMDLGFEDTKEGRAAAVQAMLWFVKYYKELGIEEVHDYGGLINGTWQGWRCNRNGQPGWKKWTDSDNGGSKNGRWIHVELAPQSNGGHAEDGVALEAAWRALPKP*
Ga0153697_13606	F005027	AGG	METSTGELIAKLTNLSHNLALELRFKESSLVLEAVGALHALPNIAETIRDSWHPSFNSSGPSKGITYISNVSLGKSDE*
Ga0153697_13608	F023340	GGAG	MLPSWGYMPLWSRDKLTLVQIFTDSATEEIVKVTVATRQAPWMTFASITEVEMVD*