Scaffold Ga0153697_1351

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1351
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14688
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F030356	Metagenome	185	Y
F049577	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_135112	F049577	GGA	MTNPDVRNGMINQAQQERITRDTLIMQKVNAAHREAFKTRFPGQVEHCMRLTAERLQAILTKKPTDLADPDTWTSTADEIAKLSEALWHLSVISQIYPMETKDDEHSQQ*
Ga0153697_135113	F012328	AGGA	MQKQTSPTDNPWDAPVEATEKAPTKSTKTKRSEAVANEVLEVPAPVQPAATNAGEYDIEGLMTDFPTATELERFVYDETGIVLQLKGRANKLKYQVAMDALNGLTIESKYIGGENPYIDRTELVPIDPIKEPPARDKNLPDRSQVQNVFLSNVVPHPDEEARAQDKKVSMLFRKYNNGMISYEILGPLSQRPHGEKIDKFGRTRPEVIKWVDPRTGEQTVMREDGTLTPQGKRLRAMMQTFKVNKSNQWDVWIDREFVSLNDAVAHNPWDISK*
Ga0153697_13514	F001299	N/A	MSDINNPEYLDNSDPEKNYDYWRQDHGGMVTQHNGVADKLLQNNDLYRSMKGDWSRTAWNKGNNIKVTTGRQDGKFYITREQMNTDEVKLRVKNYRHAAEAGIPDPLAPIGDDGKLTYKWMELPTVISIRISDQYFDGIPWAALKNDRTLKAQFYRVVETEYPEYVCYPGGKLPIPVNVAYPTKKGEKKYFRGN*
Ga0153697_13518	F030356	GGA	MLDIKHIPVQDINQNKKINATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVITKGLMPNGEVNFDFVADGEEDEAAARQATNMVSKVVNQMNDPHFVLERWVMDANMHKNGMMMIKPVREQIVRYVEISGTIDQLTAFEQQAADSGLTTLRQSKRRETVDMMKVMDEVKQLLGEHKQEFARGIADQFMASLQQPIDEETGTPDLEELRAEDIQGQEDVVNDAIRRNTIYKAKYKLTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEACELYPGIQGDLDNFREFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGESAIFILDSKFDPSKDIYQMPPPSGNLQFLEVAMDRIQKDTMAMVGMTTPQDVFNPEVMAAGNSGVKLQLALSPNQIIQDNTVRNAAEGLREAIWLVWRTLIQYGDDYGVKKLAQSSHPDKKAEFLDFLAWDDMNFCDRKQIHLELALGMMSEENALSRLQIIQKCQNELYATVTNMVQAGTMTPDMYKKVKKPFADTLYVLGVKDCDVYLPSDAEIQAMIKSSQEAQKNKQPSPEDQKNISAAKLNDVKAQQIAAEVAGEDAESQLDFMAVAAGDPKVYS*