Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1324 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1324 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15471
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (84.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15471

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (84.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F027413	Metagenome / Metatranscriptome	194	N
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_132411	F002269	AGGAG	MKDKALSAGKSYLRHAIACVGALYLSGITDPKVLANAFIAGLIGPLLKALTPSESANGVKVK*
Ga0153697_132415	F027413	AGG	MSAWLPEWRIIVGTTVYDNVLSVTMDTGRSDIDLQCNAGYARMDIVNVNNTAFDIDVTDSLTLELKNSAGTYVPVFGGEVSDFGISVRSPEEFGYVTIGNILAVGSLAKLTKALFPDALAKTYDGTQIYDILNELLINSWFEVAPALQWSGYDPTTTWANAENVGLGEIDTPGLYEMISRSADPFSSYNLCAQIAQSALGQLYEDKEGRVCYADADHRTAYLSANGYTTLSASYATPISVKSILQIGKIRNSLVYNYGNNYANQATATDATSIANYGRYQRSVSSNLHNLSDVIDVMDRELGLRAIPREQLQSITFRLDNAELPDVERDKLIDVFFGQPVVLNDLPINMFNGSFNGFVEGFAIRATPQFVDLTLTLSPTDFSLVAPQWDTVSPANLIWTGVNATLIWQNAYGGLT*
Ga0153697_13247	F066777	AGG	MGELTFIKDGLATTIHDDGEMTVVAAKQCDECGKWQTALGGFSYRDVSGEIVIWSCAQCRA*
Ga0153697_13248	F007029	AGGAG	MGFLDNYEDVNARIKRFRSEFPSGRLVAYIEDIDIIAGTILVKAEAYREYEDTVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTVQDMEKVENLPADADPWSTKASIEDMATMASSILEIGKNLGGEIVAEAPRCPHGTMIWAEGTAKSTGKPWAAYKCTERIRANQCNPVWQVLGSDGKWKPQV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1324

Overview

Ecosystem & Geography

Associated Families

Sequences