Scaffold Ga0153697_1224

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1224
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19517
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (87.80%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F018699	Metagenome	233	Y
F065546	Metagenome	127	Y
F068756	Metagenome	124	Y
F077225	Metagenome	117	Y
F079971	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_122412	F079971	GAGG	MNEETRKVKPYPSVPDDIDPVPETWHRIGAFMLWSIFTVLAVICLGLFFTGLWIWSLLI*
Ga0153697_122420	F068756	AGGAG	MTKFGDAPIKMEGGIADPDEFTWECNCKACKVKYQKWKAAFDAQQKQLKEES*
Ga0153697_122425	F077225	AGGAG	MIDPKKLQCYTMAHRLRGYADGIVDKDSHNSLTHMLRKAAEMLEAVWAEYELTLPEDKRVGGLNQ*
Ga0153697_12243	F065546	GGA	MTMLSLPKQIEAARLLTLRQMLKLEMKGMHRSRGHTAYNTLKQMGFKGTREQVLAQMDEIRNELIGKE*
Ga0153697_122434	F018699	GGAG	MATRDYKKEYKRDLETGKSGPSSDQHERQKARRAYDKKGVDRAGKDIDHIKPLRKGGKTVPGNTRLRSKSANQGDNK*
Ga0153697_12249	F001688	GGAGG	MWKYIWTELRLMLKTVTPIQAVTHELMHAEHALLQAESGVEYAQALVTYNKQRVKRLKAYLAVDEVKEPT*