Scaffold Ga0153697_1218

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1218
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19798
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (39.02%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F016253	Metagenome / Metatranscriptome	248	Y
F023575	Metagenome / Metatranscriptome	209	Y
F058715	Metagenome	134	N
F059002	Metagenome	134	Y
F065771	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_12181	F065771	N/A	MGGVQKYLTRQVQEGEISKDDLLESQSKLSLLNQAPSLVLNAIAKGWMSYPDKLETITEEEETAKWIDTYDCERAYHNRVKGMTYREIGKLMGCGMNRVSAILHHGENIVLQRKMKSLGHTVVSIPSKATVQEHITNAKSKTKSKQ*
Ga0153697_121812	F016253	AGGAG	MSDRIQSIIKGGTGVYSISKKEAGEIHKAAKKVKNYAFSYWTRNRKNKESK*
Ga0153697_121819	F013412	GAG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKPYAQRVTFRSFDNDDMDAVNLLIEGTHIMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES*
Ga0153697_121830	F023575	N/A	MAVSKGLALVYGSKGTITLFTPAGVALTTGAISTIESYDASHEADVEQIKNSAGEVVAQVSANERISLSVTFIPSAADFAQAKLAAGLPAVNGYATIASSDGVTIGGVSLDGNYVYSGGGSVKFTNSGKVMVTVTVVKYPSLAGNAAVFTL*
Ga0153697_121831	F010835	AGGA	MNAVALRTERALVDWLAAEDWSESPIGTPNCLTSYGHGAFADPDLEDSMPAFPRIVVRASTAVAVHPLDRTCEVDITATLQLSADDTSEAQALAIVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANETT*
Ga0153697_121833	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVVSGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSTADRLLQESGSFLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0153697_12187	F059002	N/A	MNILNEIKSGISRLLGVHKKVETKEVLRTLKPKRSPKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSKKLRLKR*
Ga0153697_12189	F058715	GGAGG	VSLLEKLGLTKQSMEKMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHLTYTCRELAKKYGISSSTIWDIRESKSKIE*