Scaffold Ga0153697_1197

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1197
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20605
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002997	Metagenome / Metatranscriptome	514	Y
F043944	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_119711	F043944	AGG	MIFNGHTHDTLADIDDVTMSQLQTMYADGLVGNNGVLEVLGSLTAGVFNYMRSANSSPYKLANILGNAYDYIYPPLSEQDKKASVNNSLLAFMTQAPGFQQDRFKHG*
Ga0153697_119718	F002997	N/A	MAIARFENITVNNLTFGKSDFGEQSTTQTLWFATRARVQSVANSVKISDKYRVYSDIVNFTLNYTPNTKRMIDNQNLYSINWRGFDWRIDNVRESDDRMTVMILCVRNDPVVAV*
Ga0153697_11972	F001991	GGA	LAIFNKNTLTQVSGFDNPIIAGELVYNQKTFWKLTMATAGVPVDLTGATICAQIIRRQISNLIDTRYGLSFDIADYTVSTPTAVELTITNRTDAAGLFTLVIDESTWSVISTDPQLDINAQDPVGFSGRIKISFPSSGTTPAQDSIIFLLFLVRSDGVVN*
Ga0153697_11973	F000324	AGG	MTVQIVTPIHQVTYDGATVNVYHANKGQGLPRHEHAYSHLTMCHAGSCLVTKENKSLTMTKDTQPVNLLADGWHEIEALEDGTVFVNVFAEGKY*
Ga0153697_11978	F002085	N/A	MNVITPVDGTNNIRFADFVRITTPSATYRFTTAPNNITVSAVDATAFSAVGILIKVGEAQRDIKSTANETSVTMTGIDTAMLGWVLGQDVKGSQIEMWHGFFDTSGALITTGGSGGLYQFFNGFINSFSISEQWMEEVRMYVGTITVAASSIQLILQNRQAGRYTNNNSWQFYNSGDTSMNRVSFIETINYQFGKGASANS*
Ga0153697_11979	F000934	GAG	MSLQTILSICEYVGINDQRFVGQTVSRNQKIITSELLTVVPFAFDMKPMNYLLYSKNRGTLNGLRVADKSLEQYLNFGTTGWVNYINYQGDMTPVQIAACQWQISSANKVLVLGSLPSISTTAYIVRVGDFVQVGRYSYIATADVQRGGGSTVNIPVHRNLIATLASPVNAVIGQYGTTTSMGGSTYTGITFPVILREYPTYTLVPMTNDSFLQWSGTFKAFESVL*