Scaffold Ga0153697_1195

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1195
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20655
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (22.73%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F016966	Metagenome / Metatranscriptome	243	Y
F040616	Metagenome / Metatranscriptome	161	N
F041760	Metagenome / Metatranscriptome	159	Y
F053851	Metagenome	140	N
F071981	Metagenome	121	N
F103118	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_119529	F015582	N/A	MNSNNIDPELQVEQLEDAKYLTELNHYVNTLATPSAESVALYSAKLSNLEDIHTEIRAKYPDFMPIYDTSTDSVCNQDLGKYQEMTYSISQRDMRSE*
Ga0153697_119530	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCRDIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGTKIKLDMTLKSGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV*
Ga0153697_119535	F071981	N/A	MKITIEFDTDTAAFEDNQFGEVNRILQQVGDYAYEHMLYPNYQLERNNNKGHKIVDTNGNTIGKFKITL*
Ga0153697_119536	F040616	N/A	MIDPEDIAYEDRVSGDASSYTGNGSGEDDFQDYNQNEAGDYYNE*
Ga0153697_11954	F016966	N/A	MNKVTFTRVKMQSLPNLYSGTINGEIVGFIYKPTDSKSDRNAWRSYVGFGDKAKFLYHTWDMNDAMEAVQLAVK*
Ga0153697_119543	F103118	N/A	MHNTVLMILSVRNSKSFEESVNKLQCEKIWFNGYREHELSPIVNDFVRNSNFENYFITPDDLIIKPHQFEKLKLSLNHNDIVSGWGVIRQNCTHTTITKPHNFLQTNIFKHQFTSHGFKNQQYNFSYKTHEINSLPNEIETAFTGWFYTGMKKHIWTQYPYECLNPPFASSDLMFSRRVLFDNKYKQICIKSANVIHLSNSTTMPTDKSFFDMSTCFSNKSITKTF*
Ga0153697_119544	F053851	N/A	MHNFTIDYTDGLKIDNNFYDTEFAAGKESHYMVKTYFCHKKIKRSLQTHPDQLGITATIEELESTSNKTILTSNNCNLGCWLIPSFSKFFVPYHIDIYYNKELYQSDTLDCKFKLVNFTLHPKDDRELYTWMNVIENFKKQMQCDISIKNDTVASTTEFDHIADVKYKTDDVNKQYYLGLHIGRFYQPNTNMPDINYHPDQLHNKNSLDIINDILYYYTTII*
Ga0153697_11959	F041760	N/A	MTKVLAVKYPSSVDRVRQSFDHLRQVFDVPDVSTIKDMFGSLLFNDSALYRYNYCLVRFDNKMYVIEPVDLTKCTYVRKQVEYHPLQHMI*