Scaffold Ga0153697_1193

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1193
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20779
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F018171	Metagenome / Metatranscriptome	236	Y
F019637	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_11931	F019637	N/A	VNARPLSIPARNAIDKHLMPNQIQFLVDQFGLANTAWFIRLMKSGTTPEQIVGSLVPSNYDSRRDGVFRALQFAANLPDSMMPLEIKEALTP*
Ga0153697_119311	F001272	N/A	MIKIELTQEQFNTVLQLIDIAIKAGGYQNAKVAVPVVELLITQAENPKSE*
Ga0153697_119315	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVTDANTPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK*
Ga0153697_119316	F005024	GAGG	MTVDSSKFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRIGKSRIMRRVHLIAQAKEAKAGRRGLYGEEMKAVASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSPKWKPLSKPPGYKAPKQTNGALLSLANQYGLPQENVATHKGTKARGIQAVPGFNPTASVVMTAGVADSQYNRVSQIYDQAMQKAMDDETTEMVNHMTEALLANGKVLEDNGISIK*
Ga0153697_119317	F006107	GGA	MNAAALRAELAVADYLAAADWSTSGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRIVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDESAMLTTVQVLDNRILPLFDDAGASALDAPSNDASGPFTAQFAAPLDFGGSSISNRSRTFTRTFTLYCSATI*
Ga0153697_119318	F018171	N/A	MANVHGNKYIFGSPATLAMYDATGSLIVTGYISPDIESYDITHECDTEEVRNSSGEVVGHIAYNNRLTLTVNFVPVGTNATPATALGERLKGASLPLGNGTVEITGAPAINVGGYADAINTASGGRWIYAGGGSIKTTQTGKATGTITLKRFPAISAGAATNL*
Ga0153697_11932	F010611	AGGA	MTQKEYGDRIGITQPRVAQLIRQGMPMTSPEAADTWRLQNIRTKRKTVPPNPSTLSAFAIKQDGPYRPTEASNPIDTATAATDSPQGAYERQRQIERAAYDLAVDALREGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRRVMQEHDGSVASLLKSMPKQLSGRISPHDPEHCEKELNRWVQEVALKTLHQTDPWKS*
Ga0153697_11934	F006262	N/A	VVAINFGWVSIQPEVFTFTVAIKRSYLRSVYATLGGVTLLAALAAKSISAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLDDYDLAVYYLNQDGIANPTDTQIYDKILAVVLVAVTSYGGDFSNFRREATYRMNMS*
Ga0153697_11937	F005633	N/A	MRIATTIAVDKTGKTKLVSGPEIDATLQRTNFNTVSVPEGGKLILWVQGALAPKIRKG*