Scaffold Ga0153697_1185

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1185
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21637
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F030356	Metagenome	185	Y
F049577	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_118514	F012328	AGGA	MSKKNLTPPVVAVEVNPWDDKAPVIPVDKEPVPVVAPKSMGAADFDIDGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGLEVDPKFLGGDNPYIDRTELVPVDDLKPVPAKDPSLPDIDQVQNYFVTNTIPHPDFEARMQDKKVSVIFRKYKTGEISYEIMGPVAQRPHGMKLDKYGRERPEIIKWVDPRTGEQTVMREDGSLTPQGRKLRAMMQTLKVNKSNHWDTWVDREFASLNSAVASNPWDLE*
Ga0153697_118515	F049577	GGA	MNNEARDGMIHAAQQERITRDTLIMQKVNGVHREAFLKRFPGQIEHCMRLTAERLQAILTKKPTDLSDPSTWNCTAEEIRDLTMALDKLAHLHHAYPMETGNELNKT*
Ga0153697_118519	F030356	AGGA	MLDIKNIPVQDINQNKKVNANFVRMKNLMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPTVKPVVDYATAVIAKGLMPNGEINFEFVADDEMDEEAARQATNMVSKVVNQMNDPHFILERWVMDSAMHKNGMMMIKPVREFVTRYVESEGTNDQLKAFELQAAESGLTTLRQSKRQITVMMDKAMAEIKQLLGGQQQELANELVDKHVASMRNMDEDGNYTELAAGQMEVFDKQATGQEDIINEAITRNTIYKAKYKVTGYAMNIKFHPIAQHYWICDPTVPEMKDQPFCGFYDPMTIQEAYDLYPGIQDDLENFREFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVNSASSADPDSRQVSVVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVASMCPKPLPGNFYGMSIAESVIPMQEYATSAARAEIQLGLLTATPRIGVNPDHLDFEMLQDGEAAIFILTSKFDPAKDIYQIPPPSGNLNFLETGMNRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGVKLQMALSPNQIIQDNTVRNAAEGLKEALYLVWRTLIQYGDDFGVKKLAAQCRPDKKPEFMDYVAWDEMSSMTDRKQMTLELALGMNSEENALNRLQIIKKSQMGLMETVQGMVQQGTMTPEMYKKVKKPYADTLYTLGVKDCDTYLPSDEEIAQMMKQAEEAQKNKQPPAQDKKYLADAELAQARAQQIAAEVAGEDAESQMDFMALAMGDPKVYS*
Ga0153697_118520	F015856	N/A	MIETDTVDFYNSRLTVDTSQPNKLTPSQKDQVRHYGSLAEALLKNKDLAMFVHHFKFSLADELAAIRSHSSDDNAHRVALSNELAGIDNFVNSLKRSVYLKNRIGNTNEVPNT*
Ga0153697_118523	F001299	N/A	MSNLNKPEYLDDADPEKNWDYYRQDSGGMITNHNGMADKLLTNDDLYRSMKGDWQRTSSNQSGNIAITTGREDGKFYIKREQKNTETIKAAVRQYRKTAEAGMIDPLAPIGEDGKLTYKWMDLPSVIAIRISDQYFDGIPWNALKNDRTLKAQFYRVVETEYPEYVCYPGGKLPIPVAVPYPTKKGEKKYFKGH*