Scaffold Ga0153697_1173

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1173
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22186
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (34.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001923	Metagenome / Metatranscriptome	617	Y
F014261	Metagenome	264	Y
F053888	Metagenome	140	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_117310	F001055	N/A	MANSIRHVVEQTLATYLSSQTGLAGVQILTGDGAVTQTLPKAVVLCDSARAPGDLQEGLGNYDCSVRVTLFSNADDTTLAVHRERCAALSDCMKSLDLIQAAFAATSGAAICYDVTYRSEDEGIDERSWATSFAFDILTCLDPE*
Ga0153697_117311	F092032	AGGAG	MSVTNKGVVCLYGIGAGQEASLFVQSYTVTSGFNNTATVVNEEGETVTARYDDIRGEITIEGVAKSSTVPTLGATLTFSAKTASSYPGGAANVQFKGTITKVDDRGSSKGFVSVSITAEAFEYITY*
Ga0153697_117322	F001923	N/A	VSAAPFNPEDIPKEAKDGLVAAILGGLAMTARLLLSTEPVSLGWVVRRVMAAAITAALVGYSIQEHIQSPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVAAVTKPSHAKAKAKPGPKRRK*
Ga0153697_117325	F014261	N/A	MKSLVTLFALVIFGWVIAVTFFGPELYRAINGPEPVKAAKVVRRAR*
Ga0153697_117327	F053888	N/A	MNQEPTDTVLIGDRPLRLSRPVLPHAARRLASVFPQLNALNIAGKSQADAAFALGVSVGKIRTWVELTDMHWTNLKRRGPYKTKA*
Ga0153697_117330	F000957	GGAGG	VSAFQHLDGMTALLSELYEVNERVLTGDIVSAKAAIASPRMPKLIRHYHEALSEDGAQAIYLEPFVAAGGWVGLTYSYTLPDGFTVSGSVTPRRV*
Ga0153697_11738	F001298	AGG	MSLYAEFLPDAKEMCADFSVPGSANSGAITFACLISDPAVQTVLEAGGYMERTQYNVRIPAATASWSLPDGSIGASTAIIRGGSVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLVVIDDNQ*