Scaffold Ga0153697_1167

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1167
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22642
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F018136	Metagenome / Metatranscriptome	236	N
F034182	Metagenome / Metatranscriptome	175	Y
F034928	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_116723	F011668	N/A	MNARKIALWMILLSFVFLGMALLTSCAGFHNPAFCVKTDYGTFCYELPDIQGLKK*
Ga0153697_116725	F034182	N/A	MDSHTFHTFVGTSAPAMAVLISFSEVEAWLRILSLILGICIGAVSLYKMTRPKKP*
Ga0153697_116737	F018136	N/A	MGNALIVTASENFNQISLPACFVKCTRNQESIVNSAIFQFSVDIILLAQADDTDAQAVDNLWANILCISHDIFGLKNKLNAVRPQFAFIYGILRDGPVSFATNERHFERSVRITVHSALIS*
Ga0153697_11676	F034928	AGG	MNNPKEQYWRGYPLRCWPNHQDDCYRWDWEIKVGEEWVEVVTQATRWIEEEADETLQRYLKRQQK*