Scaffold Ga0153697_1161

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1161
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23212
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F041777	Metagenome	159	Y
F046371	Metagenome / Metatranscriptome	151	N
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_116111	F023350	N/A	LTLEHYIEGHYKKFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGHRMTNEQLDILISRLSEFERLIFQEYILEDFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKTQ*
Ga0153697_116114	F041777	N/A	MKKTLLFIAMLFAGMLIAGTIDESTRQLEQTPNTINK*
Ga0153697_116119	F071250	N/A	MKKLISLERRVENLLKKYKTLRNNNKALCVRVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKERNPELRGTNHDDNKKKAQLIKPLLKK*
Ga0153697_11612	F046371	N/A	MSDNKLNFLKSQIQAFHPEWTKEQVEMEAIRIYNEANTIDDDDEGCLYCGS*
Ga0153697_116121	F049635	N/A	MNKQIYSTPFGRLVKSNFKTLNNFKNVLRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKHINEEHND*
Ga0153697_116131	F019140	N/A	MKQTPLYESLKMTYDREREIVNSIATYFQQAKPVGDILLELSQRKDMNAKEKVYLALMIGTMMVRNNEEK*
Ga0153697_116134	F021113	AGG	MRKNILAIILLLIGTTTIWTVICYHWFGNKPAKDVQVEVQKQDSVINYNAGEYDRLLQEQIELYKKLRTYEDAQLTAKTTYKRTRDSIIIRDTINRIDVIRLVNSCDSVITADSLVINNLKEQINIEGEKVNNLQEVVVAYEQKTELLNEEINTLSADKKKLEKQKKRRNRALIVTSSVAILSTFVLSILF*
Ga0153697_116136	F039140	N/A	MKEWLKSLLTSCSKVSSKRIVAIFVTINLIVLSYVATFTYYVCPIAMFDTLALLTGGLFGGTVIERFTKPNSNGTTTDRSAENNGGDLQ*
Ga0153697_116137	F027518	N/A	MNTEKEIGLIHEELQELNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQFILKML*
Ga0153697_116146	F041764	GAG	MNIEAGGFLKVELFNDDANLFLLALTKITKEQGAMGFKTYGLNEDEMKVLNTILESLG*