Scaffold Ga0153697_1154

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1154
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24297
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020137	Metagenome / Metatranscriptome	225	N
F026249	Metagenome / Metatranscriptome	198	N
F048263	Metagenome / Metatranscriptome	148	N
F078250	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_115426	F026249	N/A	MGIVQVKEGKAGKSGKGKVPIIRPSGYVKKNGPDPKEVAESDWSRVLDAASLGIPFERLCHLAGMTDKTFTKYLTRYPERKEAIEAARTRGEYDLTSTVRSCGNGWQGSAWLLERTRGYVARAQLDHTTKGKELSVSGSLLGAFGGQAK*
Ga0153697_115427	F078250	GGAGG	LTLFRCNGFRSVRALGIRDAAEVFAKRAARRAFGRRGIVRTLVEDSYTRNLSIVEFAAFIGYPSGRNETTGHNYRFTVINGGSR*
Ga0153697_11545	F048263	N/A	MALENFLQNAANFATGGLYNNLSGRDKELQQQQLAEAEAFRVNPELVREAAKYDPSIMERLGNLLTGGIYGQASGMNDKLDQRTMAMKQIRDEELQRRMEDRMNQYRMGPVQEPVGSEMNPDRSMAPTPVPTGTLRKKNTFAGGY*
Ga0153697_11548	F020137	N/A	MTAHPTNIEAAKLLQEHWPTCSSWTEDQILNWIGIFNAKKLIGIVKNEEGKCVGVGAVRFLNSIEESEDLNNNFPDGHIAWIEIAIGTEPHAVQTLWLAMMRLCSKNVTKLGGFRKGINRLYDFDRYFKLLMNKRISYGRII*