Scaffold Ga0153697_1153

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1153
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24304
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F084221	Metagenome / Metatranscriptome	112	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_115311	F072341	N/A	MSKELAALVQQSFNRSLSAEEKAIAACVSSPKLSSLTEQEFRELIAQAAVVNSIKDLPSDIEVNLLRQVADTTYKGLSIKDWQNAFLYNAIGKDFERVEAFNLFSVAFMSDVFKRYQEYKSKVWRELNKAIILPEAEPKHVEATDPLTALHADVQRWQEGKESWVEIAAPYNCQRLFRKGIYKKSMWDAEVWQRFDDLAKAKTEAKFKASNRVVLGPSAQEEFDNYQKIELSRLIYIDIIKKLISNE*
Ga0153697_115316	F066778	AGTAG	MRAGEVTSKTILMSYTREPNWEKLKPTIDWDEQEERLADKLSKLIHTQINNRKMNQSTVKSQKFVRTWDGPSGVIHYFDLVLENGEVGQVGVKDMNSPKIAVGATIHYTSEERTGPTGRKSTNFKLQNPNPFNGGAASGNSAVNSAVNYRKESPEVQNSISKSVALNNAVLFCKETKGSKPGDVLDTAEIFLAWLKGESVIEAKLSTTNESSEDEMPF*
Ga0153697_115321	F070109	N/A	VSLTSKEVRALLKLKAERDYLFKAVNICTKSDSVKGKVITDQQKSIDAWSITNEKTSQQLVKSQEQLYKEAARKESWRSAALIGIPISFIGGIIFALLF*
Ga0153697_115322	F077297	N/A	MNQQAQNQIKAAVVIVVAITICATMQIMYIALKDSEKAIEGYERRADRATHVIDSLEATNAQRMLQIEQLNVQLEQNKERYEANISAIDSLDKHGLKRAMHNLLSSLTSERYPGESNE*
Ga0153697_115323	F047677	N/A	MNWLKRVFSNDKDASSKRVASILALLVCINLSYIGTFTDYKCPEYMFDGLLILAGGGLGLTVIESIFTKKKSNESTGSESN*
Ga0153697_115324	F084221	N/A	MSNHQQQIAEGVTGTVSSILLSVPAWMLDVEFALKIVCLILSGIASIFTIYKMNKRKK*
Ga0153697_115335	F082692	N/A	MKNPQEDILISMSLLRAGAQGKSKTFQHAVGRHNARLKVWQIRAINYTILIGLLGLITLTIYSAL*
Ga0153697_11536	F093876	N/A	MNLFRKKKEQVDLNAKLLPELCSCTIIQWNYTDDIGLEATYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLAIMQGVDNAIVIDVPYNEFKKHFQELKSNIMTNDYIVQRG*