Scaffold Ga0153697_1149

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1149
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24688
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F005117	Metagenome	411	Y
F040586	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_114913	F005117	GGA	VKISFDKWYPVVLPQVNLQAEVFAKRVEKLNAERAVQVQVDSQVKKFHQYEYEIYEYRMRQITINIDITNLKRKIDALV*
Ga0153697_114914	F000332	GGAG	MRWLILLLLLGLVGAVAKNGCHVREFWSIAWSIHNPSERHQQMSMWLTNNAQHCRSQDYVMMWNNLSEWAGAADSAELRTKVIHGYKDALDREKK*
Ga0153697_11498	F040586	AGGA	MSDRHWMILQELGGAEWLRKELDKKAKMPMKYYRRELDAPSKKEVND*