Scaffold Ga0153697_1148

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1148
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24694
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (45.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F014487	Metagenome / Metatranscriptome	262	Y
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_11482	F009066	GAGG	MTESPALHTPMSEEHEKHLAGIINDLARDVSKKYRKGQEEHGGALWRRPVWKDTWDEVLDLCTYVHTLRLQLGVIADLALQGASDESLCAAQSRENCRQILAVLQGFPSAQDKK*
Ga0153697_114821	F015449	N/A	MIETFWGTTNLKVAAAVATYGAVLRPVDPVTCIVKDGQRQFTFWFNDSGTGNAKEEMECGWAQMQSEPEAAIRYIRAALENRETLLGLMKRAEPITAIKRGEQTLLVSERAKPDLKRALLNKM*
Ga0153697_114829	F024499	N/A	MSDFTEALKESLAVLHGQTGTTVTIGSAAVTGILSTISRKENVELGGFDLDLNSTFTIDISSLATAPTIGSVLVANSVSYRIVTVDTSVGSYLLGLREK*
Ga0153697_11486	F006891	AGG	MSTDQVVELAERLSLVRESIARIETRQSVILEVLERSQASLGDYHGRLREMENSAHSLRTKIWLISVCAGAVCSMVWELIKRRVGL*
Ga0153697_11488	F014487	GGA	MPLLFLALFFFSCSPKHAPSSGLPDYSDMGAAEDAGKTPSK*