Scaffold Ga0153697_1141

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1141
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25574
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F043291	Metagenome	156	N
F046909	Metagenome / Metatranscriptome	150	Y
F086797	Metagenome	110	Y
F095171	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_114129	F086797	AGGAGG	MSDSYDDYEAKMQLAERAWEIEEARRTFRTEVWTTKDGREIAIKDMDDKHLFNAYRHSQDRLLFREMVLRLFEAKLKEST*
Ga0153697_114133	F046909	GAGG	MRPPNKDFCLHMAQITFPHNKPLSWTWLFAWGFHEMYVEGWYEGVKL*
Ga0153697_114134	F002764	GAGG	LSPEDEAFEELSRRQGDWGLQGSRKHQIIRYAETNARNEVIEEVAQHIEKCSLAFGKDTIQSFTVYIRGMKR*
Ga0153697_114139	F095171	GAGG	MLNRTKFPRTFTEAFPNSMENGACIEIHVARLTIADKVARVVSLIALIVIALDCFIWRP*
Ga0153697_114140	F043291	AGGA	MKNLTYSTEVHSIDFGYLLVEFDYFEADDSVGLSEVYDWFAYTTEDFEDEPAGTEVTYELTAADQALIYSQIKKHHIAMIEDFHA*