Scaffold Ga0153697_1136

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1136
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25981
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (88.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009203	Metagenome / Metatranscriptome	321	Y
F009953	Metagenome / Metatranscriptome	310	Y
F053989	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_113619	F009953	AGGAG	LSNYQELAHVAKEIQKLKQEREAYVAAGRCDSIEEYRRVCGVVQGLNYAENIIEDLVRRMEKSDD*
Ga0153697_113628	F009203	GGA	MTEQTDSVKNVLDIVAVFTTLGTFLNLLTPVFGLIGAIVGVMRIYEMATGKEFYTLFRKKKDDDASDE*
Ga0153697_113636	F053989	AGGAG	MMDAKKALKAHMAKGMKSAHPDAAVKNMRAGGKTNSDMLKYGRNMAKVMNQRSSGRGK*